BiocParallel

Depends On Me (40): bacon, BEclear, Cardinal, CardinalIO, ChIPQC, Chromatograms, ClassifyR, clusterSeq, consensusSeekeR, DEWSeq, DEXSeq, DMCFB, DMCHMM, DSS, extraChIPs, FEAST, FRASER, GenomicFiles, INSPEcT, iPath, ISLET, matter, MBASED, metagene2, metapone, ncGTW, Oscope, OUTRIDER, PCAN, periodicDNA, pRoloc, RedisParam, Rqc, sequencing, ShortRead, SigCheck, Spectra, sva, variancePartition, xcms

Imports Me (379): abseqR, ADImpute, AffiXcan, ALDEx2, AlphaBeta, AlpsNMR, amplican, ASICS, ATACseqQC, atena, atSNP, bambu, BamScale, BANDITS, bandle, Banksy, barmixR, BASiCS, batchCorr, batchelor, BayesSpace, bayNorm, beer, benchdamic, BERT, betterChromVAR, BiocDuckDB, BioCor, BiocSingular, BioNERO, biotmle, biscuiteer, blase, bluster, brendaDb, bsseq, CAGEfightR, CAGEr, CARDspa, carnation, causalBatch, CBN2Path, ccImpute, CDI, cellbaseR, CellBench, CellMentor, CellMixS, censcyt, Cepo, CGRphylo2, ChIPexoQual, ChromSCape, chromVAR, ClusterFoldSimilarity, clustSIGNAL, CNVMetrics, CNVRanger, CoGAPS, comapr, coMethDMR, CompoundDb, concordexR, condiments, consensusOV, consICA, Coralysis, CoreGx, CorNetto, coseq, cpvSNP, crisprDesign, CrispRVariants, crupR, csaw, CTSV, cydar, cypress, CytoGLMM, cytoKernel, cytomapper, CytoMDS, CytoMethIC, CytoPipeline, damidBind, dcGSA, DCLEAR, DeconvoBuddies, decoupleR, DeepTarget, DegCre, DepInfeR, derfinder, DEScan2, DESeq2, DEsingle, DESpace, DiffBind, Dino, DMRcaller, dmrseq, DNEA, DOTSeq, dreamlet, DRIMSeq, DropletUtils, DTSEA, Dune, DysPIA, easyRNASeq, EMDomics, EMTscore, enhancerHomologSearch, enviGCMS, epimutacions, epiregulon, epistasisGA, ERSSA, EWCE, ExpHunterSuite, factR, faers, fgsea, findIPs, FindIT2, FLAMES, flowcatchR, flowSpecs, GDCRNATools, gDNAx, gDRcore, GeDi, GENESIS, GenomAutomorphism, GenomicAlignments, gINTomics, GloScope, gmapR, GOaGO, gscreend, GSEABenchmarkeR, GSEMA, GSVA, h5vc, HicAggR, HiCBricks, HiCcompare, HiCDOC, HiCExperiment, HiContacts, Holomics, HTSFilter, HybridExpress, iasva, icetea, ideal, IHWpaper, imcRtools, immGLIPH, IntEREst, IPO, IsoformSwitchAnalyzeR, IVAS, jazzPanda, JohnsonKinaseData, jvecfor, katdetectr, KinSwingR, lcmsPlot, LDM, levi, LimROTS, lisaClust, loci2path, LOCOM2, LRcell, Macarron, magpie, magrene, mariner, mbkmeans, MCbiclust, metabinR, MetaboAnnotation, MetaboCoreUtils, metabomxtr, metaseqR2, methodical, MethylAid, methylGSA, methyLImp2, methylInheritance, methylscaper, methylumi, MetNet, mia, miaViz, MICSQTL, miloR, minfi, minSNPs, MIRit, mist, mixOmics, MOGAMUN, MoleculeExperiment, monaLisa, motifbreakR, MotifPeeker, MPAC, MPRAnalyze, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MSnbase, msqrob2, MsQuality, MSstatsResponse, MultiAssaySpatialExperiment, multiHiCcompare, MultiOmicsBridge, mumosa, muscat, NBAMSeq, nnSVG, notame, notameStats, NPARC, omicsGMF, oosse, ORFik, orthos, OVESEG, PAIRADISE, pairedGSEA, panoramic, pathMED, PCAtools, PDATK, peakPantheR, pengls, PharmacoGx, pipeComp, poem, pram, proActiv, profileplyr, ProteoDisco, PSMatch, qpgraph, QRscore, qsea, QuasR, RadioGx, raer, rawDiag, Rcwl, recount, ReducedExperiment, RegEnrich, REMP, RiboCrypt, RJMCMCNucleosomes, RNAmodR, RNAseqCovarImpute, RNAshapeQC, robin, ROTS, Rsamtools, RUVcorr, sangeranalyseR, SanityR, saseR, satuRn, scanMiR, scanMiRApp, SCArray, SCArray.sat, scater, scBatchQC, scBubbletree, scClassify, scCompoundDE, scConform, scDblFinder, scDD, scDDboost, scde, scDesign3, SCFA, scFastDE, scFeatures, scGate, scGraphVerse, scHiCcompare, scHOT, scMerge, scMultiSim, SCnorm, scone, scoreInvHap, scPCA, scran, screenCounter, scRepertoire, scruff, scShapes, scTHI, scTypeEval, scuttle, seqpac, SEraster, sesame, SEtools, sigFeature, signatureSearch, SimBu, SimiCviz, simpleSeg, singIST, SingleCellAlleleExperiment, singleCellTK, singscore, SmartPhos, smoppix, SNPhood, spacexr, SpaNorm, spARI, sparrow, SpatialFeatureExperiment, spatialGE, SpectralTAD, SpectraStash, spicyR, splatter, SpliceImpactR, SpliceWiz, SplicingGraphs, spoon, SpotSweeper, srnadiff, StabMap, Statial, SUITOR, SuperCellCyto, SVP, syntenet, TAPseq, TBSignatureProfiler, ternarynet, TFBSTools, tidyCoverage, TmCalculator, TMixClust, ToxicoGx, TPP2D, tpSVG, tradeSeq, TreeSummarizedExperiment, Trendy, TSENAT, TVTB, txcutr, UCell, UPDhmm, VariantFiltering, VariantTools, VDJdive, velociraptor, vmrseq, Voyager, waddR, weitrix, wSIR, xCell2, zinbwave

Suggests Me (58): alabaster.mae, beachmat, BiocNeighbors, bioLeak, CAGEWorkflow, cellNexus, cliqueMS, clustermq, conos, DelayedArray, DuckDBArray, easyEWAS, EpiCompare, escape, futurize, gdscloud, GenomicDataCommons, ggsc, glmGamPoi, GOSemSim, GRaNIE, h5mread, HDF5Array, imageFeatureTCGA, IOBR, ISAnalytics, MeLSI, MethylAidData, MungeSumstats, netSmooth, omicsPrint, pagoda2, phase1RMD, plyinteractions, PureCN, RaMS, randRotation, rebook, rhdf5, S4Arrays, scGPS, scLANE, SeqArray, Single.mTEC.Transcriptomes, SingleR, spatialHeatmap, survBootOutliers, survClust, SVG, TENxBrainData, TENxPBMCData, TFutils, TileDBArray, TrajectoryUtils, TSCAN, universalmotif, wrTopDownFrag, xcore