PCAN

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: 3.24 · Package version: 1.41.0

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PCAN")

Details

Maintainer	Matthew Page <matthew.page@ucb.com> and Patrice Godard <patrice.godard@gmail.com>
Author	Matthew Page and Patrice Godard
License	CC BY-NC-ND 4.0
Downloads rank	546
Source branch	devel
biocViews	Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation

Documentation

Assessing gene relevance for a set of phenotypes

Download

Follow the installation instructions to use this package in your R session.

Source package	PCAN_1.41.0.tar.gz
Windows binary (x86_64)	PCAN_1.41.0.zip
macOS binary (arm64)	PCAN_1.41.0.tgz
macOS binary (x86_64)	PCAN_1.41.0.tgz

Dependencies

Depends: R (>= 3.3), BiocParallel

Imports: grDevices, stats

Suggests: BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb