bayNorm
Single-cell RNA sequencing data normalization
Bioconductor version: 3.24 · Package version: 1.31.0
bayNorm is used for normalizing single-cell RNA-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bayNorm")Details
| Maintainer | Wenhao Tang <wt215@ic.ac.uk> |
| Author | Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/WT215/bayNorm |
| Bug Reports | https://github.com/WT215/bayNorm/issues |
| Downloads rank | 489 |
| Source branch | devel |
| biocViews | ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | bayNorm_1.31.0.tar.gz |
| Windows binary (x86_64) | bayNorm_1.31.0.zip |
| macOS binary (arm64) | bayNorm_1.31.0.tgz |
| macOS binary (x86_64) | bayNorm_1.31.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
LinkingTo: Rcpp, RcppArmadillo, RcppProgress