AlphaBeta
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Bioconductor version: 3.24 · Package version: 1.27.0
AlphaBeta is a computational method for estimating epimutation rates and spectra from high-throughput DNA methylation data in plants. The method has been specifically designed to: 1. analyze 'germline' epimutations in the context of multi-generational mutation accumulation lines (MA-lines). 2. analyze 'somatic' epimutations in the context of plant development and aging.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AlphaBeta")Details
| Maintainer | Yadollah Shahryary Dizaji <shahryary@gmail.com> |
| Author | Yadollah Shahryary Dizaji [cre, aut], Frank Johannes [aut], Rashmi Hazarika [aut] |
| License | GPL-3 |
| Downloads rank | 431 |
| Source branch | devel |
| biocViews | Epigenetics, FunctionalGenomics, Genetics, MathematicalBiology, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | AlphaBeta_1.27.0.tar.gz |
| Windows binary (x86_64) | AlphaBeta_1.27.0.zip |
| macOS binary (arm64) | AlphaBeta_1.27.0.tgz |
| macOS binary (x86_64) | AlphaBeta_1.27.0.tgz |
Dependencies
Depends: R (>= 3.6.0)
Imports: dplyr (>= 0.7), data.table (>= 1.10), stringr (>= 1.3), utils (>= 3.6.0), gtools (>= 3.8.0), optimx (>= 2018-7.10), expm (>= 0.999-4), stats (>= 3.6), BiocParallel (>= 1.18), igraph (>= 1.2.4), graphics (>= 3.6), ggplot2 (>= 3.2), grDevices (>= 3.6), plotly (>= 4.9)