omicsPrint

Cross omic genetic fingerprinting

Bioconductor version: 3.24 · Package version: 1.33.0

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("omicsPrint")

Details

Maintainer	Davy Cats <davycats.dc@gmail.com>
Author	Maarten van Iterson [aut], Davy Cats [cre]
License	GPL (>= 2)
Downloads rank	570
Source branch	devel
biocViews	DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics

Documentation

omicsPrint: detection of data linkage errors in multiple omics studies

Download

Follow the installation instructions to use this package in your R session.

Source package	omicsPrint_1.33.0.tar.gz
Windows binary (x86_64)	omicsPrint_1.33.0.zip
macOS binary (arm64)	omicsPrint_1.33.0.tgz
macOS binary (x86_64)	omicsPrint_1.33.0.tgz

Dependencies

Depends: R (>= 3.5), MASS

Imports: methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment

Suggests: BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats