DSS
Dispersion shrinkage for sequencing data
Bioconductor version: 3.24 · Package version: 2.61.0
DSS is an R library performing differntial analysis for count-based sequencing data. It detectes differentially expressed genes (DEGs) from RNA-seq, and differentially methylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-seq). The core of DSS is a new dispersion shrinkage method for estimating the dispersion parameter from Gamma-Poisson or Beta-Binomial distributions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DSS")Details
| Maintainer | Hao Wu <hao.wu@emory.edu>, Hao Feng <hxf155@case.edu> |
| Author | Hao Wu<hao.wu@emory.edu>, Hao Feng<hxf155@case.edu> |
| License | GPL |
| Downloads rank | 1322 |
| Source branch | devel |
| biocViews | DNAMethylation, DifferentialExpression, DifferentialMethylation, GeneExpression, RNASeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | DSS_2.61.0.tar.gz |
| Windows binary (x86_64) | DSS_2.61.0.zip |
| macOS binary (arm64) | DSS_2.61.0.tgz |
| macOS binary (x86_64) | DSS_2.61.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, Biobase, BiocParallel, bsseq, parallel