pairedGSEA
Paired DGE and DGS analysis for gene set enrichment analysis
Bioconductor version: 3.24 · Package version: 1.13.0
pairedGSEA makes it simple to run a paired Differential Gene Expression (DGE) and Differencital Gene Splicing (DGS) analysis. The package allows you to store intermediate results for further investiation, if desired. pairedGSEA comes with a wrapper function for running an Over-Representation Analysis (ORA) and functionalities for plotting the results.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pairedGSEA")Details
| Maintainer | Dimitrios S. Kanakoglou <dimkan@dtu.dk> |
| Author | Dimitrios S. Kanakoglou [cre, aut], Søren Helweg Dam [aut] (ORCID: <https://orcid.org/0000-0002-9895-0930>), Lars Rønn Olsen [aut] (ORCID: <https://orcid.org/0000-0002-6725-7850>), Kristoffer Vitting-Seerup [aut] (ORCID: <https://orcid.org/0000-0002-6450-0608>) |
| License | MIT + file LICENSE |
| URL | https://github.com/IsoformAnalysisGroup/pairedGSEA |
| Bug Reports | https://github.com/IsoformAnalysisGroup/pairedGSEA/issues |
| Downloads rank | 358 |
| Source branch | devel |
| biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneSetEnrichment, ImmunoOncology, Pathways, RNASeq, Software, Transcription |
Download
Follow the installation instructions to use this package in your R session.
| Source package | pairedGSEA_1.13.0.tar.gz |
| Windows binary (x86_64) | pairedGSEA_1.13.0.zip |
| macOS binary (arm64) | pairedGSEA_1.13.0.tgz |
| macOS binary (x86_64) | pairedGSEA_1.13.0.tgz |