AffiXcan
A Functional Approach To Impute Genetically Regulated Expression
Bioconductor version: 3.24 · Package version: 1.31.0
Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffiXcan")Details
| Maintainer | Alessandro Lussana <alessandro.lussana@protonmail.com> |
| Author | Alessandro Lussana [aut, cre] |
| License | GPL-3 |
| Downloads rank | 469 |
| Source branch | devel |
| biocViews | DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | AffiXcan_1.31.0.tar.gz |
| Windows binary (x86_64) | AffiXcan_1.31.0.zip |
| macOS binary (arm64) | AffiXcan_1.31.0.tgz |
| macOS binary (x86_64) | AffiXcan_1.31.0.tgz |
Dependencies
Depends: R (>= 3.6), SummarizedExperiment
Imports: MultiAssayExperiment, BiocParallel, crayon