TrajectoryUtils

Single-Cell Trajectory Analysis Utilities

Bioconductor version: 3.24 · Package version: 1.21.0

Implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. Include a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TrajectoryUtils")

Details

Maintainer	Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Author	Aaron Lun [aut, cre], Kelly Street [aut]
License	GPL-3
URL	https://bioconductor.org/packages/TrajectoryUtils
Bug Reports	https://github.com/LTLA/TrajectoryUtils/issues
Downloads rank	3939
Source branch	devel
biocViews	GeneExpression, SingleCell, Software

Documentation

Trajectory utilities for package developers

Download

Follow the installation instructions to use this package in your R session.

Source package	TrajectoryUtils_1.21.0.tar.gz
Windows binary (x86_64)	TrajectoryUtils_1.21.0.zip
macOS binary (arm64)	TrajectoryUtils_1.21.0.tgz
macOS binary (x86_64)	TrajectoryUtils_1.21.0.tgz

Dependencies

Depends: SingleCellExperiment

Imports: methods, stats, Matrix, igraph, S4Vectors, SummarizedExperiment

Suggests: BiocNeighbors, DelayedArray, DelayedMatrixStats, BiocParallel, testthat, knitr, BiocStyle, rmarkdown

Reverse dependencies

Depends On Me (2): slingshot, TSCAN

Imports Me (3): condiments, singleCellTK, tradeSeq