Rcwl
An R interface to the Common Workflow Language
Bioconductor version: 3.24 · Package version: 1.29.0
The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rcwl")Details
| Maintainer | Qiang Hu <qiang.hu@roswellpark.org> |
| Author | Qiang Hu [aut, cre], Qian Liu [aut] |
| License | GPL-2 | file LICENSE |
| Downloads rank | 407 |
| Source branch | devel |
| biocViews | ImmunoOncology, Software, WorkflowStep |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rcwl_1.29.0.tar.gz |
| macOS binary (arm64) | Rcwl_1.29.0.tgz |
| macOS binary (x86_64) | Rcwl_1.29.0.tgz |
Dependencies
Depends: R (>= 3.6), yaml, methods, S4Vectors
Imports: utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk