CardinalIO

Read and write mass spectrometry imaging files

Bioconductor version: 3.24 · Package version: 1.11.0

Fast and efficient reading and writing of mass spectrometry imaging data files. Supports imzML and Analyze 7.5 formats. Provides ontologies for mass spectrometry imaging.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CardinalIO")

Details

Maintainer	Kylie Ariel Bemis <k.bemis@northeastern.edu>
Author	Kylie Ariel Bemis [aut, cre]
License	Artistic-2.0 \| file LICENSE
URL	http://www.cardinalmsi.org
Bug Reports	https://github.com/kuwisdelu/CardinalIO/issues
Downloads rank	490
Source branch	devel
biocViews	DataImport, ImagingMassSpectrometry, Infrastructure, MassSpectrometry, Software

Documentation

CardinalIO: Parsing and writing imzML files

Download

Follow the installation instructions to use this package in your R session.

Source package	CardinalIO_1.11.0.tar.gz
Windows binary (x86_64)	CardinalIO_1.11.0.zip
macOS binary (arm64)	CardinalIO_1.11.0.tgz
macOS binary (x86_64)	CardinalIO_1.11.0.tgz

Dependencies

Depends: R (>= 4.4), BiocParallel, matter, ontologyIndex

Imports: methods, S4Vectors, stats, utils, tools

Suggests: BiocStyle, testthat, knitr, rmarkdown

Reverse dependencies

Imports Me (2): Cardinal, quantMSImageR