RJMCMCNucleosomes
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
Bioconductor version: 3.24 · Package version: 1.37.0
This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RJMCMCNucleosomes")Details
| Maintainer | Astrid Deschênes <adeschen@hotmail.com> |
| Author | Pascal Belleau [aut], Rawane Samb [aut], Astrid Deschênes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes |
| Bug Reports | https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues |
| System Requirements | Rcpp |
| Downloads rank | 527 |
| Source branch | devel |
| biocViews | Bayesian, BiologicalQuestion, ChIPSeq, Coverage, NucleosomePositioning, Sequencing, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RJMCMCNucleosomes_1.37.0.tar.gz |
| Windows binary (x86_64) | RJMCMCNucleosomes_1.37.0.zip |
| macOS binary (arm64) | RJMCMCNucleosomes_1.37.0.tgz |
| macOS binary (x86_64) | RJMCMCNucleosomes_1.37.0.tgz |
Dependencies
Depends: R (>= 3.5), IRanges, GenomicRanges
Imports: Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, Seqinfo, S4Vectors (>= 0.23.10), BiocParallel, stats, graphics, methods, grDevices
LinkingTo: Rcpp