Chromatograms
Infrastructure for Chromatographic Mass Spectrometry Data
Bioconductor version: 3.24 · Package version: 1.3.3
The Chromatograms packages defines an efficient infrastructure for storing and handling of chromatographic mass spectrometry data. It provides different implementations of *backends* to store and represent the data. Such backends can be optimized for small memory footprint or fast data access/processing. A lazy evaluation queue and chunk-wise processing capabilities ensure efficient analysis of also very large data sets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Chromatograms")Details
| Maintainer | Philippine Louail <philippine.louail@outlook.com> |
| Author | Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Philippine Louail [aut, cre] (ORCID: <https://orcid.org/0009-0007-5429-6846>, fnd: European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/Chromatograms |
| Bug Reports | https://github.com/RforMassSpectrometry/Chromatograms/issues |
| Downloads rank | 288 |
| Source branch | devel |
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Chromatograms_1.3.3.tar.gz |
| Windows binary (x86_64) | Chromatograms_1.3.3.zip |
| macOS binary (arm64) | Chromatograms_1.3.3.tgz |
| macOS binary (x86_64) | Chromatograms_1.3.3.tgz |
Dependencies
Depends: BiocParallel, ProtGenerics (>= 1.39.2), R (>= 4.5.0)
Imports: data.table, methods, S4Vectors, MsCoreUtils (>= 1.7.5), Spectra
Suggests: MsDataHub, roxygen2, BiocStyle (>= 2.5.19), testthat, knitr (>= 1.1.0), rmarkdown, mzR (>= 2.41.4), MsBackendMetaboLights (>= 1.3.1), pheatmap, vdiffr, IRanges, RColorBrewer