MultiAssaySpatialExperiment
Multi-Assay Experiment with Spatial Context
Bioconductor version: 3.24 · Package version: 0.99.12
Extends MultiAssayExperiment with spatial context elements (images, labels, points, shapes) for integrative analysis of spatially resolved multi-omics data. Supports coercion to and from SpatialExperiment and SpatialFeatureExperiment.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MultiAssaySpatialExperiment")Details
| Maintainer | Patrick Aboyoun <aboyounp@gene.com> |
| Author | Patrick Aboyoun [aut, cre], Genentech, Inc. [cph] |
| License | MIT + file LICENSE |
| URL | https://github.com/Genentech/MultiAssaySpatialExperiment |
| Bug Reports | https://github.com/Genentech/MultiAssaySpatialExperiment/issues |
| Source branch | devel |
| biocViews | DataRepresentation, Infrastructure, Software, Spatial |
Documentation
- Introduction to MultiAssaySpatialExperiment
- Working with MultiAssaySpatialExperiment
- MultiAssaySpatialExperiment use cases
- Design of MultiAssaySpatialExperiment
- MultiAssaySpatialExperiment Cheatsheet
Download
Follow the installation instructions to use this package in your R session.
| Source package | MultiAssaySpatialExperiment_0.99.12.tar.gz |
| Windows binary (x86_64) | MultiAssaySpatialExperiment_0.99.12.zip |
| macOS binary (arm64) | MultiAssaySpatialExperiment_0.99.12.tgz |
| macOS binary (x86_64) | MultiAssaySpatialExperiment_0.99.12.tgz |
Dependencies
Depends: R (>= 4.5.0), methods, MultiAssayExperiment
Imports: tools, BiocGenerics, BiocParallel, S4Vectors, MatrixGenerics, SummarizedExperiment, SingleCellExperiment, SpatialExperiment, sf
Suggests: knitr, rmarkdown, BiocStyle, testthat, arrow, DropletUtils, jsonlite, sfarrow, terra, ggplot2, Matrix, RBioFormats, SpatialFeatureExperiment, spdep, zellkonverter
Reverse dependencies
Imports Me (1): BiocDuckDB