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MCbiclust

Massive correlating biclusters for gene expression data and associated methods

Bioconductor version: 3.24 · Package version: 1.37.0

Custom made algorithm and associated methods for finding, visualising and analysing biclusters in large gene expression data sets. Algorithm is based on with a supplied gene set of size n, finding the maximum strength correlation matrix containing m samples from the data set.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MCbiclust")

Details

MaintainerRobert Bentham <robert.bentham.11@ucl.ac.uk>
AuthorRobert Bentham
LicenseGPL-2
Downloads rank601
Source branchdevel
biocViewsClustering, GeneExpression, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMCbiclust_1.37.0.tar.gz
Windows binary (x86_64)MCbiclust_1.37.0.zip
macOS binary (arm64)MCbiclust_1.37.0.tgz
macOS binary (x86_64)MCbiclust_1.37.0.tgz
Dependencies

Depends: R (>= 3.4)

Imports: BiocParallel, graphics, utils, stats, AnnotationDbi, GO.db, org.Hs.eg.db, GGally, ggplot2, scales, cluster, WGCNA

Suggests: gplots, knitr, rmarkdown, BiocStyle, gProfileR, MASS, dplyr, pander, devtools, testthat, GSVA