Dune
Improving replicability in single-cell RNA-Seq cell type discovery
Bioconductor version: 3.24 · Package version: 1.25.0
Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Dune")Details
| Maintainer | Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu> |
| Author | Hector Roux de Bezieux [aut, cre] (ORCID: <https://orcid.org/0000-0002-1489-8339>), Kelly Street [aut] |
| License | MIT + file LICENSE |
| Downloads rank | 360 |
| Source branch | devel |
| biocViews | Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Dune_1.25.0.tar.gz |
| Windows binary (x86_64) | Dune_1.25.0.zip |
| macOS binary (x86_64) | Dune_1.25.0.tgz |
Dependencies
Depends: R (>= 3.6)
Imports: BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode
Suggests: knitr, rmarkdown, testthat (>= 2.1.0)