cellbaseR
Querying annotation data from the high performance Cellbase web
Bioconductor version: 3.24 · Package version: 1.37.0
This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cellbaseR") Details
| Maintainer | Mohammed OE Abdallah <melsiddieg@gmail.com> |
| Author | Mohammed OE Abdallah |
| License | Apache License (== 2.0) |
| URL | https://github.com/melsiddieg/cellbaseR |
| Downloads rank | 523 |
| Source branch | devel |
| biocViews | Annotation, Software, VariantAnnotation |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cellbaseR_1.37.0.tar.gz |
| Windows binary (x86_64) | cellbaseR_1.37.0.zip |
| macOS binary (arm64) | cellbaseR_1.37.0.tgz |
| macOS binary (x86_64) | cellbaseR_1.37.0.tgz |
Dependencies
Depends: R (>= 3.4)
Imports: methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
Suggests: BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation