Biobase

Depends On Me (246): ACME, affy, affycomp, affycompData, affyContam, affycoretools, affyPLM, AGDEX, AgiMicroRna, AIMS, ALL, altcdfenvs, annaffy, AnnotationDbi, AnnotationForge, antiProfilesData, ArrayExpress, arrayMvout, bandle, bcellViper, beadarray, beadarrayExampleData, BicARE, bigmelon, bioDist, BioMVCClass, BioQC, bladderbatch, BLMA, borealis, brgedata, CAMERA, cancerclass, cancerdata, casper, Category, categoryCompare, CCl4, CCPROMISE, CGHbase, CGHcall, CGHregions, clippda, CLL, clusterStab, CMA, cn.farms, codelink, colonCA, convert, copa, coreheat, covEB, covRNA, CRCL18, crmn, curatedBreastData, curatedCRCData, curatedOvarianData, CytoMDS, davidTiling, DEXSeq, DFP, diggit, diggitdata, DLBCL, doppelgangR, dressCheck, DSS, dyebias, EBarrays, EDASeq, edge, EGSEA, eLNNpairedCov, epigenomix, epivizrData, etec16s, EuPathDB, ExiMiR, ExpressionAtlas, fabia, fabiaData, factDesign, fastseg, fibroEset, flowBeads, frma, gaga, gaschYHS, GeneMeta, geneplotter, geneRecommender, GeneRegionScan, GeneSelectMMD, geNetClassifier, GeoDiff, GEOexplorer, GeomxTools, GEOquery, GOexpress, golubEsets, goProfiles, GOstats, GSE103322, GSE13015, GSE62944, GSEABase, GSEABenchmarkeR, GSEAlm, GSVAdata, GWASbyCluster, GWASTools, hapFabia, harbChIP, heatmapFlex, HELP, Hiiragi2013, hopach, HTqPCR, HumanAffyData, humanStemCell, HybridMTest, iBMQ, iCheck, IdeoViz, idiogram, INSPEcT, isobar, iterativeBMA, IVAS, Iyer517, kidpack, leeBamViews, leukemiasEset, lmQCM, lumi, lumiBarnes, lungExpression, made4, MAQCsubset, massiR, MEAL, metabomxtr, metagenomeSeq, MetaGxBreast, MetaGxOvarian, MethPed, methylumi, Mfuzz, MiChip, microbiomeExplorer, mimager, MiRaGE, miRcomp, miRNATarget, MLInterfaces, MM2Sdata, MMDiff2, MMDvariance, monocle, msd16s, MSnbase, Mulcom, MultiDataSet, multtest, mvoutData, NanoStringDiff, NanoStringNCTools, NanoTube, netZooR, Neve2006, NOISeq, nondetects, normalize450K, NormqPCR, octad, oligo, omicRexposome, OrderedList, OTUbase, PADOG, pandaR, panp, pcaMethods, pdInfoBuilder, pepStat, phenoTest, PLPE, POWSC, PREDA, PREDAsampledata, ProData, pRolocGUI, PROMISE, propOverlap, prostateCancerCamcap, prostateCancerGrasso, prostateCancerStockholm, prostateCancerTaylor, prostateCancerVarambally, pumadata, qpcrNorm, qPLEXanalyzer, R453Plus1Toolbox, RbcBook1, rbsurv, rcellminer, rcellminerData, ReadqPCR, rexposome, Rmagpie, Rnits, RTCA, RTopper, RUVnormalizeData, RUVSeq, safe, SCAN.UPC, SeqGSEA, SigCheck, siggenes, singleCellTK, SpeCond, SPEM, SpikeInSubset, spkTools, splineTimeR, SummarizedExperiment, TCGAcrcmiRNA, TCGAcrcmRNA, tigre, tilingArray, topGO, TPP, tRanslatome, tweeDEseqCountData, UNDO, VegaMC, viper, vsn, wateRmelon, webbioc, XDE, yarn, yeastCC

Imports Me (300): a4Base, a4Classif, a4Core, a4Preproc, ABarray, ACE, aCGH, adSplit, affyILM, AgiMicroRna, ANF, annmap, AnnoProbe, annotate, AnnotationHubData, annotationTools, arrayQualityMetrics, attract, ballgown, bapred, BASiCS, BayesKnockdown, BgeeDB, biobroom, bioCancer, biocViews, BioNet, biosigner, biscuiteer, BiSeq, blima, BloodCancerMultiOmics2017, bnem, BreastSubtypeR, BSgenomeForge, bsseq, BubbleTree, CAFE, canceR, Cardinal, CellTrails, cfdnakit, CGHnormaliter, ChIPQC, ChIPXpress, ChromHeatMap, CIARA, cicero, ClassComparison, ClassDiscovery, clipper, CluMSID, cn.mops, COCOA, cogena, combi, CompoundDb, ConsensusClusterPlus, consensusOV, coRdon, CoreGx, corTest, crlmm, cummeRbund, cyanoFilter, cycle, cydar, CytoML, D4TAlink.light, DAPAR, ddCt, DEGreport, DESeq2, DeSousa2013, destiny, DExMA, DExMAdata, discordant, easyRNASeq, EBarrays, ecolitk, EGAD, ENmix, ensembldb, EpiMix, esetVis, ExiMiR, ExpHunterSuite, ExpressionNormalizationWorkflow, ffpe, findIPs, Fletcher2013a, flowClust, flowCore, flowFP, flowMatch, flowMeans, flowSpecs, flowStats, flowViz, flowWorkspace, FMradio, FRASER, frma, frmaTools, gCrisprTools, gcrma, gemma.R, geneClassifiers, geneExpressionFromGEO, GeneExpressionSignature, genefilter, GeneMeta, geneRecommender, GeneRegionScan, GENESIS, GenomicInteractions, GenomicScores, GenomicSuperSignature, GeoMxWorkflows, GEOsubmission, gep2pep, ggbio, GlobalAncova, globaltest, gmapR, GSE13015, GSEMA, GSRI, GSVA, Gviz, HEM, hermes, hgu133plus2CellScore, HTqPCR, HTSFilter, IHWpaper, infinityFlow, InPAS, InTAD, IntegratedJM, IsoformSwitchAnalyzeR, isomiRs, katdetectr, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, kissDE, LiquidAssociation, LRBaseDbi, maGUI, makecdfenv, MAPFX, maSigPro, MAST, mastR, mBPCR, mcsurvdata, MeSHDbi, metaseqR2, MethylAid, methylCC, methylclock, methylumi, mfa, MiChip, microbiomeDASim, minfi, MinimumDistance, MiPP, MIRA, miRSM, missMethyl, MLSeq, mogsa, Moonlight2R, MoonlightR, MSnID, MultiAssayExperiment, MultiRNAflow, multiscan, mzR, ncdfFlow, nlcv, NMF, npGSEA, nucleR, OAtools, oligoClasses, omicade4, omicsViewer, omXplore, ontoProc, openCyto, oposSOM, oppar, OrganismDbi, panp, PCAPAM50, phantasus, phantasusLite, PharmacoGx, phenomis, phyloseq, piano, plgem, plier, podkat, prebs, PrInCE, proBatch, progeny, pRoloc, pRolocdata, PROMISE, PRONE, PROPS, Prostar, protGear, ptairMS, puma, PureCN, pvac, pvca, qcmetrics, QDNAseq, QFeatures, qpgraph, quantiseqr, quantro, QuasR, qusage, RadioGx, randPack, RCPA, ReactomeGSA, ReportingTools, RIVER, Rmagpie, RMassBank, RNAseqCovarImpute, roastgsa, RobLox, rols, ropls, ROTS, RPPanalyzer, rScudo, Rtpca, RUVnormalize, scmap, scTGIF, seqc, SeqVarTools, shinyMethyl, ShortRead, signatureSearchData, SigsPack, sigsquared, singscore, sitadela, sketchR, SmartPhos, SMITE, SomaticSignatures, SpatialDecon, SpatialFeatureExperiment, SpatialOmicsOverlay, spkTools, SplineDV, SPONGE, ssizeRNA, standR, STATegRa, subSeq, TailRank, TDbasedUFEadv, TEQC, TFBSTools, tidyFlowCore, timecourse, TMixClust, TnT, topdownr, ToxicoGx, tradeSeq, TTMap, twilight, txdbmaker, uSORT, VanillaICE, variancePartition, VariantAnnotation, VariantFiltering, VariantTools, vidger, vulcan, wateRmelon, wpm, xcms, Xeva

Suggests Me (105): amap, aroma.affymetrix, AUCell, autonomics, BaseSet, BiocGenerics, biotmleData, breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX, CellMapper, CimpleG, clustComp, ClusterGVis, clValid, coseq, CrossValidate, cypress, dar, DART, dcanr, dearseq, DeconvoBuddies, distrDoc, dorothea, DspikeIn, dyebiasexamples, edgeR, EnMCB, EpiDISH, epivizr, epivizrChart, epivizrStandalone, GenAlgo, genefu, GENIE3, GenomicPlot, GenomicRanges, ggpicrust2, GSAR, GSgalgoR, Heatplus, hexbin, HMP16SData, HMP2Data, HTSCluster, isatabr, kebabs, les, limma, M3Drop, mammaPrintData, mCSEA, messina, MetabolSSMF, mi4p, mitology, Modeler, MosaiClusteR, MOSim, msa, mtbls2, multiclassPairs, multiClust, NACHO, omicsTools, ordinalbayes, OSAT, pathMED, Patterns, PCAtools, PLSDAbatch, RcisTarget, RegParallel, RFGeneRank, rheumaticConditionWOLLBOLD, ribosomeProfilingQC, ROC, rsconnect, RTCGA, scater, scmeth, SeqArray, Seurat, seventyGeneData, sigminer, SomaDataIO, sparrow, spatialHeatmap, stageR, survcomp, TargetScore, TCGAbiolinks, TFutils, tidytof, tinyarray, tkWidgets, TOP, vbmp, widgetTools, yeastExpData, yeastRNASeq