ExiMiR
R functions for the normalization of Exiqon miRNA array data
Bioconductor version: 3.23 · Package version: 2.54.0
This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExiMiR")Details
| Maintainer | Sylvain Gubian <DL.RSupport@pmi.com> |
| Author | Sylvain Gubian <DL.RSupport@pmi.com>, Alain Sewer <DL.RSupport@pmi.com>, PMP SA |
| License | GPL-2 |
| Downloads rank | 612 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ExiMiR_2.54.0.tar.gz |
| Windows binary (x86_64) | ExiMiR_2.54.0.zip |
| macOS binary (arm64) | ExiMiR_2.54.0.tgz |
| macOS binary (x86_64) | ExiMiR_2.54.0.tgz |
Dependencies
Depends: R (>= 2.10), Biobase (>= 2.5.5), affy (>= 1.26.1), limma
Imports: affyio (>= 1.13.3), Biobase (>= 2.5.5), preprocessCore (>= 1.10.0)
Suggests: mirna10cdf