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UNDO

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Bioconductor version: 3.23 · Package version: 1.54.0

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UNDO")

Details

MaintainerNiya Wang <wangny@vt.edu>
AuthorNiya Wang <wangny@vt.edu>
LicenseGPL-2
Downloads rank537
Source branchRELEASE_3_23
biocViewsSoftware

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageUNDO_1.54.0.tar.gz
Windows binary (x86_64)UNDO_1.54.0.zip
macOS binary (arm64)UNDO_1.54.0.tgz
macOS binary (x86_64)UNDO_1.54.0.tgz
Dependencies

Depends: R (>= 2.15.2), methods, BiocGenerics, Biobase

Imports: MASS, boot, nnls, stats, utils