safe
Significance Analysis of Function and Expression
Bioconductor version: 3.23 · Package version: 3.52.1
SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("safe")Details
| Maintainer | Ludwig Geistlinger <ludwig.geistlinger@gmail.com> |
| Author | William T. Barry |
| License | GPL (>= 2) |
| Downloads rank | 1204 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneSetEnrichment, Pathways, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | safe_3.52.1.tar.gz |
| Windows binary (x86_64) | safe_3.52.1.zip |
| macOS binary (arm64) | safe_3.52.1.tgz |
| macOS binary (x86_64) | safe_3.52.1.tgz |
Dependencies
Depends: R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM
Suggests: GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats