subSeq
Subsampling of high-throughput sequencing count data
Bioconductor version: 3.23 · Package version: 1.42.0
Subsampling of high throughput sequencing count data for use in experiment design and analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("subSeq")Details
| Maintainer | Andrew J. Bass <ajbass@princeton.edu>, John D. Storey <jstorey@princeton.edu> |
| Author | David Robinson, John D. Storey, with contributions from Andrew J. Bass |
| License | MIT + file LICENSE |
| URL | http://github.com/StoreyLab/subSeq |
| Downloads rank | 607 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | subSeq_1.42.0.tar.gz |
| Windows binary (x86_64) | subSeq_1.42.0.zip |
| macOS binary (arm64) | subSeq_1.42.0.tgz |
| macOS binary (x86_64) | subSeq_1.42.0.tgz |
Dependencies
Depends: R (>= 3.2)
Imports: data.table, dplyr, tidyr, ggplot2, magrittr, qvalue (>= 1.99), digest, Biobase
Suggests: limma, edgeR, DESeq2, DEXSeq (>= 1.9.7), testthat, knitr