adSplit
Annotation-Driven Clustering
Bioconductor version: 3.23 · Package version: 1.82.0
This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("adSplit") Details
| Maintainer | Claudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de> |
| Author | Claudio Lottaz, Joern Toedling |
| License | GPL (>= 2) |
| URL | http://compdiag.molgen.mpg.de/software/adSplit.shtml |
| Downloads rank | 695 |
| Source branch | RELEASE_3_23 |
| biocViews | Clustering, Microarray, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | adSplit_1.82.0.tar.gz |
| Windows binary (x86_64) | adSplit_1.82.0.zip |
| macOS binary (arm64) | adSplit_1.82.0.tgz |
| macOS binary (x86_64) | adSplit_1.82.0.tgz |
Dependencies
Depends: R (>= 2.1.0), methods (>= 2.1.0)
Imports: AnnotationDbi, Biobase (>= 1.5.12), cluster (>= 1.9.1), GO.db (>= 1.8.1), graphics, grDevices, KEGGREST (>= 1.30.1), multtest (>= 1.6.0), stats (>= 2.1.0)
Suggests: golubEsets (>= 1.0), vsn (>= 1.5.0), hu6800.db (>= 1.8.1)