covEB
Empirical Bayes estimate of block diagonal covariance matrices
Bioconductor version: 3.23 · Package version: 1.38.0
Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("covEB") Details
| Maintainer | C. Pacini <clarepacini@gmail.com> |
| Author | C. Pacini |
| License | GPL-3 |
| Downloads rank | 420 |
| Source branch | RELEASE_3_23 |
| biocViews | Bayesian, GeneExpression, ImmunoOncology, Microarray, Preprocessing, RNASeq, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | covEB_1.38.0.tar.gz |
| Windows binary (x86_64) | covEB_1.38.0.zip |
| macOS binary (arm64) | covEB_1.38.0.tgz |
| macOS binary (x86_64) | covEB_1.38.0.tgz |
Dependencies
Depends: R (>= 3.3), mvtnorm, igraph, gsl, Biobase, stats, LaplacesDemon, Matrix
Suggests: curatedBladderData