isobar
Analysis and quantitation of isobarically tagged MSMS proteomics data
Bioconductor version: 3.23 · Package version: 1.58.0
isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT. Features modules for integrating and validating PTM-centric datasets (isobar-PTM). More information on http://www.ms-isobar.org.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("isobar")Details
| Maintainer | Florian P Breitwieser <florian.bw@gmail.com> |
| Author | Florian P Breitwieser <florian.bw@gmail.com> and Jacques Colinge <jacques.colinge@inserm.fr>, with contributions from Alexey Stukalov <stukalov@biochem.mpg.de>, Xavier Robin <xavier.robin@unige.ch> and Florent Gluck <florent.gluck@unige.ch> |
| License | LGPL-2 |
| URL | https://github.com/fbreitwieser/isobar |
| Bug Reports | https://github.com/fbreitwieser/isobar/issues |
| Downloads rank | 715 |
| Source branch | RELEASE_3_23 |
| biocViews | Bioinformatics, ImmunoOncology, MassSpectrometry, MultipleComparisons, Proteomics, QualityControl, Software |
Documentation
- isobar for developers
- isobar for quantification of PTM datasets
- isobar package for iTRAQ and TMT protein quantification
- Usecases for isobar package
Download
Follow the installation instructions to use this package in your R session.
| Source package | isobar_1.58.0.tar.gz |
| Windows binary (x86_64) | isobar_1.58.0.zip |
| macOS binary (arm64) | isobar_1.58.0.tgz |
| macOS binary (x86_64) | isobar_1.58.0.tgz |