uSORT
uSORT: A self-refining ordering pipeline for gene selection
Bioconductor version: 3.23 · Package version: 1.38.0
This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("uSORT")Details
| Maintainer | Hao Chen <chen_hao@immunol.a-star.edu.sg> |
| Author | Mai Chan Lau, Hao Chen, Jinmiao Chen |
| License | Artistic-2.0 |
| Downloads rank | 544 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBiology, DNASeq, GUI, ImmunoOncology, RNASeq, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | uSORT_1.38.0.tar.gz |
| Windows binary (x86_64) | uSORT_1.38.0.zip |
| macOS binary (arm64) | uSORT_1.38.0.tgz |
| macOS binary (x86_64) | uSORT_1.38.0.tgz |