genefilter
genefilter: methods for filtering genes from high-throughput experiments
Bioconductor version: 3.23 · Package version: 1.94.0
Some basic functions for filtering genes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genefilter")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Robert Gentleman [aut], Vincent J. Carey [aut], Wolfgang Huber [aut], Florian Hahne [aut], Emmanuel Taiwo [ctb] ('howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.), Khadijah Amusat [ctb] (Converted genefilter vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| Downloads rank | 14765 |
| Source branch | RELEASE_3_23 |
| biocViews | Microarray, Software |
Documentation
- How to find genes whose expression profile is similar to that of specified genes
- 03 - Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)
- Using the genefilter function to filter genes from a microarray dataset
Download
Follow the installation instructions to use this package in your R session.
| Source package | genefilter_1.94.0.tar.gz |
| Windows binary (x86_64) | genefilter_1.94.0.zip |
| macOS binary (arm64) | genefilter_1.94.0.tgz |
| macOS binary (x86_64) | genefilter_1.94.0.tgz |
Dependencies
Imports: MatrixGenerics (>= 1.11.1), AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival, grDevices
Suggests: class, hgu95av2.db, tkWidgets, ALL, ROC, RColorBrewer, BiocStyle, knitr
Reverse dependencies
Depends On Me (5): CNTools, GeneMeta, lmQCM, rnaseqGene, sva
Imports Me (37): a4Base, annmap, arrayQualityMetrics, broadSeq, Category, causalBatch, cbaf, ClassifyR, CoNI, countsimQC, covRNA, DEXSeq, ENmix, EpiDISH, FlowSorted.Blood.EPIC, GSRI, Hiiragi2013, IHWpaper, metaseqR2, methylCC, methylumi, minfi, MLInterfaces, mogsa, NBAMSeq, netgsa, pcaExplorer, PECA, phenoTest, protGear, SGCP, spatialHeatmap, specmine, SpliceWiz, tilingArray, XDE, zinbwave
Suggests Me (45): annotate, BioNet, BloodCancerMultiOmics2017, categoryCompare, clusterStab, codelink, cola, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, DelayedArray, EnrichedHeatmap, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, HDF5Array, logicFS, lumi, maGUI, MAQCsubset, MMUPHin, MosaiClusteR, npGSEA, oligo, phyloseq, pvac, qpgraph, RforProteomics, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, simplifyEnrichment, Single.mTEC.Transcriptomes, SRscore, SuperLearner, TCGAbiolinks, topGO