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ABarray

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.

Bioconductor version: 3.23 · Package version: 1.80.0

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABarray")

Details

MaintainerYongming Andrew Sun <sunya@appliedbiosystems.com>
AuthorYongming Andrew Sun
LicenseGPL
Downloads rank636
Source branchRELEASE_3_23
biocViewsMicroarray, OneChannel, Preprocessing, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageABarray_1.80.0.tar.gz
Windows binary (x86_64)ABarray_1.80.0.zip
macOS binary (arm64)ABarray_1.80.0.tgz
macOS binary (x86_64)ABarray_1.80.0.tgz
Dependencies

Imports: Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils

Suggests: limma, LPE