affyILM
Linear Model of background subtraction and the Langmuir isotherm
Bioconductor version: 3.23 · Package version: 1.64.0
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyILM")Details
| Maintainer | Myriam Kroll and Fabrice Berger <fabrice.berger@gmail.com> |
| Author | K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon |
| License | GPL-3 |
| Downloads rank | 550 |
| Source branch | RELEASE_3_23 |
| biocViews | Microarray, OneChannel, Preprocessing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | affyILM_1.64.0.tar.gz |
| Windows binary (x86_64) | affyILM_1.64.0.zip |
| macOS binary (arm64) | affyILM_1.64.0.tgz |
| macOS binary (x86_64) | affyILM_1.64.0.tgz |
Dependencies
Depends: R (>= 2.10.0), methods, gcrma
Imports: affxparser (>= 1.16.0), affy, graphics, Biobase
Suggests: AffymetrixDataTestFiles, hgfocusprobe