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nucleR

Nucleosome positioning package for R

Bioconductor version: 3.23 · Package version: 2.44.0

Nucleosome positioning for Tiling Arrays and NGS experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

Details

MaintainerAlba Sala <alba.sala@irbbarcelona.org>
AuthorOscar Flores, Ricard Illa
LicenseLGPL (>= 3)
Downloads rank750
Source branchRELEASE_3_23
biocViewsChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagenucleR_2.44.0.tar.gz
Windows binary (x86_64)nucleR_2.44.0.zip
macOS binary (arm64)nucleR_2.44.0.tgz
macOS binary (x86_64)nucleR_2.44.0.tgz
Dependencies

Depends: R (>= 3.5.0), methods

Imports: Biobase, BiocGenerics, Biostrings, Seqinfo, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices

Suggests: BiocStyle, knitr, rmarkdown, testthat