ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip
Bioconductor version: 3.23 · Package version: 1.48.3
Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ENmix")Details
| Maintainer | Zongli Xu <xuz@niehs.nih.gov> |
| Author | Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/ENmix |
| Bug Reports | https://github.com/Bioconductor/ENmix/issues |
| Downloads rank | 761 |
| Source branch | RELEASE_3_23 |
| biocViews | BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ENmix_1.48.3.tar.gz |
| Windows binary (x86_64) | ENmix_1.48.3.zip |
| macOS binary (arm64) | ENmix_1.48.3.tgz |
| macOS binary (x86_64) | ENmix_1.48.3.tgz |
Dependencies
Depends: parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0)
Imports: grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors
Suggests: minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown