qcmetrics

A Framework for Quality Control

Bioconductor version: 3.23 · Package version: 1.50.0

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qcmetrics")

Details

Maintainer	Laurent Gatto <laurent.gatto@uclouvain.be>
Author	Laurent Gatto [aut, cre]
License	GPL-2
URL	http://lgatto.github.io/qcmetrics/articles/qcmetrics.html
Bug Reports	https://github.com/lgatto/qcmetrics/issues
Downloads rank	705
Source branch	RELEASE_3_23
biocViews	ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization

Documentation

Index file for the qcmetrics package vignette

Download

Follow the installation instructions to use this package in your R session.

Source package	qcmetrics_1.50.0.tar.gz
Windows binary (x86_64)	qcmetrics_1.50.0.zip
macOS binary (arm64)	qcmetrics_1.50.0.tgz
macOS binary (x86_64)	qcmetrics_1.50.0.tgz

Dependencies

Depends: R (>= 3.3)

Imports: Biobase, methods, knitr, tools, xtable, pander, S4Vectors

Suggests: affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown, markdown

Reverse dependencies

Imports Me (1): MSstatsQC