NOISeq
Exploratory analysis and differential expression for RNA-seq data
Bioconductor version: 3.23 · Package version: 2.56.0
Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NOISeq") Details
| Maintainer | Sonia Tarazona <sotacam@eio.upv.es> |
| Author | Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa |
| License | Artistic-2.0 |
| Downloads rank | 1005 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | NOISeq_2.56.0.tar.gz |
| Windows binary (x86_64) | NOISeq_2.56.0.zip |
| macOS binary (arm64) | NOISeq_2.56.0.tgz |
| macOS binary (x86_64) | NOISeq_2.56.0.tgz |
Dependencies
Depends: R (>= 2.13.0), methods, Biobase (>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2)
Reverse dependencies
Depends On Me (1): metaSeq
Imports Me (5): benchdamic, broadSeq, CNVPanelizer, damidBind, ExpHunterSuite
Suggests Me (2): compcodeR, GeoTcgaData