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NOISeq

Exploratory analysis and differential expression for RNA-seq data

Bioconductor version: 3.23 · Package version: 2.56.0

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NOISeq")

Details

MaintainerSonia Tarazona <sotacam@eio.upv.es>
AuthorSonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa
LicenseArtistic-2.0
Downloads rank1005
Source branchRELEASE_3_23
biocViewsDifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageNOISeq_2.56.0.tar.gz
Windows binary (x86_64)NOISeq_2.56.0.zip
macOS binary (arm64)NOISeq_2.56.0.tgz
macOS binary (x86_64)NOISeq_2.56.0.tgz
Dependencies

Depends: R (>= 2.13.0), methods, Biobase (>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2)

Reverse dependencies

Depends On Me (1): metaSeq

Imports Me (5): benchdamic, broadSeq, CNVPanelizer, damidBind, ExpHunterSuite

Suggests Me (2): compcodeR, GeoTcgaData