viper
Virtual Inference of Protein-activity by Enriched Regulon analysis
Bioconductor version: 3.23 · Package version: 1.46.0
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("viper")Details
| Maintainer | Mariano J Alvarez <reef103@gmail.com> |
| Author | Mariano J Alvarez <reef103@gmail.com> |
| License | file LICENSE |
| Downloads rank | 1729 |
| Source branch | RELEASE_3_23 |
| biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | viper_1.46.0.tar.gz |
| Windows binary (x86_64) | viper_1.46.0.zip |
| macOS binary (arm64) | viper_1.46.0.tgz |
| macOS binary (x86_64) | viper_1.46.0.tgz |
Dependencies
Depends: R (>= 2.14.0), Biobase, methods
Imports: mixtools, stats, parallel, e1071, KernSmooth
Suggests: bcellViper
Reverse dependencies
Depends On Me (2): aracne.networks, vulcan
Imports Me (3): diggit, diggitdata, RTN
Suggests Me (6): decoupleR, dorothea, easier, MethReg, MOMA, vulcandata