Bioc2026 Registration Open!

ReportingTools

Tools for making reports in various formats

Bioconductor version: 3.23 · Package version: 2.52.0

The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReportingTools")

Details

MaintainerJason A. Hackney <hackney.jason@gene.com>, Gabriel Becker <becker.gabe@gene.com>, Jessica L. Larson <larson.jessica@gmail.com>
AuthorJason A. Hackney, Melanie Huntley, Jessica L. Larson, Christina Chaivorapol, Gabriel Becker, and Josh Kaminker
LicenseArtistic-2.0
Downloads rank1259
Source branchRELEASE_3_23
biocViewsDataRepresentation, GO, GeneSetEnrichment, ImmunoOncology, Microarray, RNASeq, Software, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageReportingTools_2.52.0.tar.gz
Windows binary (x86_64)ReportingTools_2.52.0.zip
macOS binary (arm64)ReportingTools_2.52.0.tgz
macOS binary (x86_64)ReportingTools_2.52.0.tgz
Dependencies

Depends: methods, knitr, utils

Imports: Biobase, hwriter, Category, GOstats, limma (>= 3.17.5), lattice, AnnotationDbi, edgeR, annotate, PFAM.db, GSEABase, BiocGenerics (>= 0.1.6), grid, XML, R.utils, DESeq2 (>= 1.3.41), ggplot2, ggbio, IRanges

Suggests: RUnit, ALL, hgu95av2.db, org.Mm.eg.db, shiny, pasilla, org.Sc.sgd.db, rmarkdown, markdown

Reverse dependencies

Imports Me (1): affycoretools

Suggests Me (4): cpvSNP, EnrichmentBrowser, GSEABase, npGSEA