CGHcall
Calling aberrations for array CGH tumor profiles.
Bioconductor version: 3.23 · Package version: 2.74.0
Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CGHcall")Details
| Maintainer | Mark van de Wiel <mark.vdwiel@vumc.nl> |
| Author | Mark van de Wiel, Sjoerd Vosse |
| License | GPL (http://www.gnu.org/copyleft/gpl.html) |
| Downloads rank | 910 |
| Source branch | RELEASE_3_23 |
| biocViews | Microarray, Preprocessing, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CGHcall_2.74.0.tar.gz |
| Windows binary (x86_64) | CGHcall_2.74.0.zip |
| macOS binary (arm64) | CGHcall_2.74.0.tgz |
| macOS binary (x86_64) | CGHcall_2.74.0.tgz |
Dependencies
Depends: R (>= 2.0.0), impute (>= 1.8.0), DNAcopy (>= 1.6.0), methods, Biobase, CGHbase (>= 1.15.1), snowfall
Reverse dependencies
Depends On Me (2): CGHnormaliter, GeneBreak
Imports Me (2): CGHnormaliter, QDNAseq