graph

graph: A package to handle graph data structures

Bioconductor version: Release (2.12)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graph")

To cite this package in a publication, start R and enter:

    citation("graph")

PDF	R Script	Attributes for Graph Objects
PDF	R Script	clusterGraph and distGraph
PDF	R Script	Graph
PDF	R Script	Graph Design
PDF	R Script	graphBAM and MultiGraph classes
PDF		Reference Manual

biocViews	GraphsAndNetworks, Software
Version	1.38.3
In Bioconductor since	BioC 1.6 (R-1.11) or earlier
License	Artistic-2.0
Depends	R (>= 2.10), methods
Imports	methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, flowWorkspace, gaggle, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, graphite, GSEABase, gwascat, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, nem, netresponse, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, ROntoTools, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me	biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, graphite, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, Rgraphviz, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO, VariantTools
Suggests Me	AnnotationDbi, BiocCaseStudies, Category, categoryCompare, DEGraph, EBcoexpress, ecolitk, GeneAnswers, MmPalateMiRNA, rBiopaxParser, SPIA