Bioconductor version: Release (2.12)
q-order partial correlation graphs, or qp-graphs for short, are undirected Gaussian graphical Markov models built from q-order partial correlations. They are useful for learning undirected graphical Gaussian Markov models from data sets where the number of random variables p exceeds the available sample size n as, for instance, in the case of microarray data where they can be employed to reverse engineer a molecular regulatory network.
Author: R. Castelo and A. Roverato
Maintainer: Robert Castelo <robert.castelo at upf.edu>
To install this package, start R and enter:
    source("http://bioconductor.org/biocLite.R")
    biocLite("qpgraph")
    To cite this package in a publication, start R and enter:
    citation("qpgraph")
    | BasicUsersGuide.pdf | ||
| R Script | Reverse-engineer transcriptional regulatory networks using qpgraph | |
| R Script | Simulating molecular regulatory networks using qpgraph | |
| Reference Manual | ||
| Text | NEWS | 
| biocViews | GeneExpression, GeneRegulation, GraphsAndNetworks, Microarray, NetworkInference, Pathways, Software, Transcription | 
| Version | 1.16.3 | 
| In Bioconductor since | BioC 2.4 (R-2.9) | 
| License | GPL (>= 2) | 
| Depends | R (>= 2.14.0) | 
| Imports | methods, Matrix (>= 1.0), graphics, annotate, graph(>= 1.37.6), Biobase, GGBase, AnnotationDbi, mvtnorm, qtl, Rgraphviz | 
| Suggests | genefilter, org.EcK12.eg.db | 
| System Requirements | |
| URL | http://functionalgenomics.upf.edu/qpgraph | 
| Depends On Me | |
| Imports Me | clipper | 
| Suggests Me | 
| Package Source | qpgraph_1.16.3.tar.gz | 
| Windows Binary | qpgraph_1.16.3.zip (32- & 64-bit) | 
| Mac OS X 10.6 (Snow Leopard) | qpgraph_1.16.3.tgz | 
| Package Downloads Report | Download Stats | 
 
  
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