GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: Release (2.12)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GOstats")

To cite this package in a publication, start R and enter:

    citation("GOstats")

Documentation

PDF		Hypergeometric tests for less common model organisms
PDF	R Script	Hypergeometric Tests Using GOstats
PDF	R Script	Visualizing Data Using GOstats
PDF		Reference Manual

Details

biocViews	Annotation, Bioinformatics, GO, MultipleComparisons, Software
Version	2.26.0
In Bioconductor since	BioC 1.6 (R-1.11) or earlier
License	Artistic-2.0
Depends	R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports	AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats, AnnotationForge
Suggests	hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
System Requirements
URL
Depends On Me	attract, MineICA
Imports Me	affycoretools, attract, categoryCompare, ReportingTools
Suggests Me	BiocCaseStudies, Category, eisa, GSEAlm, HTSanalyzeR, MineICA, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, safe

Package Downloads

Package Source	GOstats_2.26.0.tar.gz
Windows Binary	GOstats_2.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GOstats_2.26.0.tgz
Package Downloads Report	Download Stats

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