DNAcopy
DNA Copy Number Data Analysis
Bioconductor version: 3.24 · Package version: 1.87.0
Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAcopy")Details
| Maintainer | Venkatraman E. Seshan <seshanv@mskcc.org> |
| Author | Venkatraman E. Seshan, Adam Olshen |
| License | GPL (>= 2) |
| Downloads rank | 4692 |
| Source branch | devel |
| biocViews | CopyNumberVariation, Microarray, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | DNAcopy_1.87.0.tar.gz |
| Windows binary (x86_64) | DNAcopy_1.87.0.zip |
| macOS binary (arm64) | DNAcopy_1.87.0.tgz |
| macOS binary (x86_64) | DNAcopy_1.87.0.tgz |
Reverse dependencies
Depends On Me (6): CGHcall, cghMCR, CRImage, CSclone, ParDNAcopy, PureCN
Imports Me (17): ADaCGH2, ChAMP, cn.farms, CNAnorm, CNVrd2, conumee, GWASTools, jointseg, maftools, MDTS, MEDIPS, MinimumDistance, PSCBS, QDNAseq, rCGH, SCOPE, wavFeatExt
Suggests Me (10): ACNE, aroma.cn, aroma.core, bcp, calmate, cn.mops, CopyNumberPlots, fastseg, nullranges, sesame