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CRImage

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: 3.24 · Package version: 1.61.0

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CRImage")

Details

MaintainerHenrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan@cancer.org.uk>
AuthorHenrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda <oscar.rueda@cancer.org.uk>, Florian Markowetz <Florian.Markowetz@cancer.org.uk>
LicenseArtistic-2.0
Downloads rank697
Source branchdevel
biocViewsCellBiology, Classification, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageCRImage_1.61.0.tar.gz
Windows binary (x86_64)CRImage_1.61.0.zip
macOS binary (arm64)CRImage_1.61.0.tgz
macOS binary (x86_64)CRImage_1.61.0.tgz
Dependencies

Depends: EBImage, DNAcopy, aCGH

Imports: MASS, e1071, foreach, sgeostat