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cghMCR

Find chromosome regions showing common gains/losses

Bioconductor version: 3.24 · Package version: 1.71.0

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cghMCR")

Details

MaintainerJ. Zhang <jzhang@jimmy.harvard.edu>
AuthorJ. Zhang and B. Feng
LicenseLGPL
Downloads rank599
Source branchdevel
biocViewsCopyNumberVariation, Microarray, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagecghMCR_1.71.0.tar.gz
Windows binary (x86_64)cghMCR_1.71.0.zip
macOS binary (arm64)cghMCR_1.71.0.tgz
macOS binary (x86_64)cghMCR_1.71.0.tgz
Dependencies

Depends: methods, DNAcopy, CNTools, limma

Imports: BiocGenerics (>= 0.1.6), stats4