cn.farms

cn.FARMS - factor analysis for copy number estimation

Bioconductor version: 3.24 · Package version: 1.61.0

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cn.farms")

Details

Maintainer	Andreas Mitterecker <mitteran11@gmail.com>
Author	Andreas Mitterecker, Djork-Arne Clevert
License	LGPL (>= 2.0)
URL	http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Downloads rank	674
Source branch	devel
biocViews	CopyNumberVariation, Microarray, Software

Documentation

cn.farms: Manual for the R package

Download

Follow the installation instructions to use this package in your R session.

Source package	cn.farms_1.61.0.tar.gz
Windows binary (x86_64)	cn.farms_1.61.0.zip
macOS binary (arm64)	cn.farms_1.61.0.tgz
macOS binary (x86_64)	cn.farms_1.61.0.tgz

Dependencies

Depends: R (>= 3.0), Biobase, methods, ff, oligoClasses, snow

Imports: DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice