graph
graph: A package to handle graph data structures
Bioconductor version: 3.23 · Package version: 1.90.0
A package that implements some simple graph handling capabilities.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("graph")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| Downloads rank | 24782 |
| Source branch | RELEASE_3_23 |
| biocViews | GraphAndNetwork, Software |
Documentation
- Attributes for Graph Objects
- How To use the clusterGraph and distGraph classes
- Graph Design
- graphBAM and MultiGraph classes
- How to use the graph package
Download
Follow the installation instructions to use this package in your R session.
| Source package | graph_1.90.0.tar.gz |
| Windows binary (x86_64) | graph_1.90.0.zip |
| macOS binary (arm64) | graph_1.90.0.tgz |
| macOS binary (x86_64) | graph_1.90.0.tgz |
Dependencies
Depends: R (>= 2.10), methods, BiocGenerics (>= 0.13.11)
Suggests: SparseM (>= 0.36), XML, RBGL, RUnit, cluster, BiocStyle, knitr
Enhances: Rgraphviz
Reverse dependencies
Depends On Me (33): apComplex, biocGraph, BioMVCClass, BioNet, BLMA, CellNOptR, clipper, CNORfeeder, cyjShiny, DLBCL, EnrichmentBrowser, flowMerge, GOstats, GraphAT, gridGraphviz, GSEABase, hypergraph, keggorthology, PairViz, pathRender, PerfMeas, Pigengene, qtlnet, RbcBook1, RBGL, RCyjs, Rgraphviz, ROntoTools, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me (80): abn, AnnotationHubData, BayesNetBP, BCDAG, BgeeDB, BiDAG, BiocCheck, BiocFHIR, biocGraph, BiocPkgTools, biocViews, BioPlex, bnem, BNrich, CAMERA, Category, categoryCompare, CePa, chimeraviz, ChIPpeakAnno, CHRONOS, classGraph, clustNet, CodeDepends, cogmapr, consICA, CopulaSCR, CytoML, DEGraph, DEsubs, EnrichDO, epiNEM, EventPointer, fgga, flowClust, flowWorkspace, gage, GeneNetworkBuilder, GenomicInteractionNodes, ggm, GraphAT, graphite, gridDebug, hyperdraw, KEGGgraph, mirIntegrator, MIRit, mnem, MOSClip, MRPC, NCIgraph, net4pg, netgsa, NetPreProc, netresponse, OncoSimulR, ontoProc, openCyto, oposSOM, OrganismDbi, pathview, pcalg, pcgen, qpgraph, rags2ridges, RANKS, RCPA, RCy3, RGraph2js, rsbml, rsolr, rSpectral, scGraphVerse, SEMgraph, SGCP, SplicingGraphs, topologyGSA, tpc, unifDAG, VariantFiltering
Suggests Me (39): anansi, AnnotationDbi, arulesViz, bnlearn, bnstruct, bsub, caugi, DAPAR, DEGraph, EBcoexpress, ecolitk, gbutils, GeneNet, gMCP, gwascat, KEGGlincs, lava, loon, maGUI, MLP, netmeta, NetPathMiner, omXplore, PFCI, proftools, psych, rBiopaxParser, rCausalMGM, RCX, rEMM, rPref, rTRM, S4Vectors, sisal, SPIA, textplot, tidygraph, VariantTools, zenplots