chimeraviz
Visualization tools for gene fusions
Bioconductor version: 3.23 · Package version: 1.38.0
chimeraviz manages data from fusion gene finders and provides useful visualization tools.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chimeraviz")Details
| Maintainer | Stian Lågstad <stianlagstad@gmail.com> |
| Author | Stian Lågstad [aut, cre], Sen Zhao [ctb], Andreas M. Hoff [ctb], Bjarne Johannessen [ctb], Ole Christian Lingjærde [ctb], Rolf Skotheim [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/stianlagstad/chimeraviz |
| Bug Reports | https://github.com/stianlagstad/chimeraviz/issues |
| System Requirements | bowtie, samtools, and egrep are required for some functionalities |
| Downloads rank | 667 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | chimeraviz_1.38.0.tar.gz |
| Windows binary (x86_64) | chimeraviz_1.38.0.zip |
| macOS binary (arm64) | chimeraviz_1.38.0.tgz |
| macOS binary (x86_64) | chimeraviz_1.38.0.tgz |
Dependencies
Depends: Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter, data.table
Imports: methods, grid, Rsamtools, GenomeInfoDb, GenomicAlignments, RColorBrewer, graphics, AnnotationDbi, RCircos, org.Hs.eg.db, org.Mm.eg.db, rmarkdown, graph, Rgraphviz, DT, plyr, dplyr, BiocStyle, checkmate, gtools, magick