rBiopaxParser
Parses BioPax files and represents them in R
Bioconductor version: 3.23 · Package version: 2.52.0
Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rBiopaxParser")Details
| Maintainer | Frank Kramer <frank.kramer@informatik.uni-augsburg.de> |
| Author | Frank Kramer |
| License | GPL (>= 2) |
| URL | https://github.com/frankkramer-lab/rBiopaxParser |
| Downloads rank | 1010 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rBiopaxParser_2.52.0.tar.gz |
| Windows binary (x86_64) | rBiopaxParser_2.52.0.zip |
| macOS binary (arm64) | rBiopaxParser_2.52.0.tgz |
| macOS binary (x86_64) | rBiopaxParser_2.52.0.tgz |
Dependencies
Depends: R (>= 4.0), data.table
Imports: XML
Suggests: Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
Reverse dependencies
Suggests Me (2): AnnotationHub, NetPathMiner