EBImage
Image processing and analysis toolbox for R
Bioconductor version: 3.24 · Package version: 4.55.2
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EBImage") Details
| Maintainer | Andrzej Oleś <andrzej.oles@gmail.com> |
| Author | Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais |
| License | LGPL |
| URL | https://github.com/aoles/EBImage |
| Bug Reports | https://github.com/aoles/EBImage/issues |
| Downloads rank | 3625 |
| Source branch | devel |
| biocViews | Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | EBImage_4.55.2.tar.gz |
| Windows binary (x86_64) | EBImage_4.55.2.zip |
| macOS binary (arm64) | EBImage_4.55.2.tgz |
| macOS binary (x86_64) | EBImage_4.55.2.tgz |
Dependencies
Depends: methods
Imports: BiocGenerics (>= 0.59.6), graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils, htmltools, htmlwidgets, RCurl
Reverse dependencies
Depends On Me (9): CRImage, cytomapper, DonaPLLP2013, FISHalyseR, flowcatchR, HD2013SGI, ImageArray, MerfishData, nucim
Imports Me (28): AiES, alabaster.sfe, BioImageDbs, bioimagetools, BioThermR, bnbc, CatsCradle, CONFESS, cytoviewer, FastSegmentation, flowCHIC, heatmaps, imcRtools, LFApp, LOMAR, MoleculeExperiment, ProxReg, RBioFormats, RockFab, SAFARI, simpleSeg, sosta, SpatialFeatureExperiment, spatialGE, SpatialOmicsOverlay, synapsis, xenLite, yamss
Suggests Me (12): aroma.core, cooltools, crownsegmentr, glow, HilbertVis, ijtiff, juicr, lidR, metagear, pliman, spatialdataR, Voyager