bnbc
Bandwise normalization and batch correction of Hi-C data
Bioconductor version: 3.24 · Package version: 1.35.0
Tools to normalize (several) Hi-C data from replicates.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bnbc")Details
| Maintainer | Kipper Fletez-Brant <cafletezbrant@gmail.com> |
| Author | Kipper Fletez-Brant [cre, aut], Kasper Daniel Hansen [aut] |
| License | Artistic-2.0 |
| URL | https://github.com/hansenlab/bnbc |
| Bug Reports | https://github.com/hansenlab/bnbc/issues |
| Downloads rank | 574 |
| Source branch | devel |
| biocViews | HiC, Normalization, Preprocessing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | bnbc_1.35.0.tar.gz |
| Windows binary (x86_64) | bnbc_1.35.0.zip |
| macOS binary (arm64) | bnbc_1.35.0.tgz |
| macOS binary (x86_64) | bnbc_1.35.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, GenomicRanges
Imports: Rcpp (>= 0.12.12), IRanges, rhdf5, data.table, Seqinfo, S4Vectors, matrixStats, preprocessCore, sva, parallel, EBImage, utils
LinkingTo: Rcpp
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BSgenome.Hsapiens.UCSC.hg19