wateRmelon
Illumina DNA methylation array normalization and metrics
Bioconductor version: 3.24 · Package version: 2.19.0
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("wateRmelon")Details
| Maintainer | Leo C Schalkwyk <lschal@essex.ac.uk> |
| Author | Leo C Schalkwyk [cre, aut], Tyler J Gorrie-Stone [aut], Ruth Pidsley [aut], Chloe CY Wong [aut], Nizar Touleimat [ctb], Matthieu Defrance [ctb], Andrew Teschendorff [ctb], Jovana Maksimovic [ctb], Louis Y El Khoury [ctb], Yucheng Wang [ctb], Alexandria Andrayas [ctb] |
| License | GPL-3 |
| Downloads rank | 1339 |
| Source branch | devel |
| biocViews | DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | wateRmelon_2.19.0.tar.gz |
| Windows binary (x86_64) | wateRmelon_2.19.0.zip |
| macOS binary (arm64) | wateRmelon_2.19.0.tgz |
| macOS binary (x86_64) | wateRmelon_2.19.0.tgz |
Dependencies
Depends: R (>= 3.5.0), Biobase, limma, methods, matrixStats, methylumi, lumi, ROC, IlluminaHumanMethylation450kanno.ilmn12.hg19, illuminaio
Imports: Biobase
Suggests: RPMM, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, BiocStyle, knitr, rmarkdown, IlluminaHumanMethylationEPICmanifest, irlba, FlowSorted.Blood.EPIC, FlowSorted.Blood.450k, preprocessCore
Enhances: minfi