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alabaster.base

Save Bioconductor Objects to File

Bioconductor version: 3.24 · Package version: 1.13.4

Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.base")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseMIT + file LICENSE
URLhttps://github.com/ArtifactDB/alabaster.base
Bug Reportshttps://github.com/ArtifactDB/alabaster.base/issues
System RequirementsC++17, GNU make
Downloads rank5434
Source branchdevel
biocViewsDataImport, DataRepresentation, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagealabaster.base_1.13.4.tar.gz
Windows binary (x86_64)alabaster.base_1.13.4.zip
Dependencies

Imports: alabaster.schemas, methods, utils, S4Vectors, rhdf5 (>= 2.47.6), jsonlite, jsonvalidate, Rcpp

LinkingTo: Rcpp, assorthead (>= 1.1.2), Rhdf5lib

Suggests: BiocStyle, rmarkdown, knitr, testthat, digest, Matrix, alabaster.matrix

Reverse dependencies

Depends On Me (12): alabaster, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.se, alabaster.sfe, alabaster.spatial, alabaster.string, alabaster.vcf

Imports Me (4): celldex, chevreulShiny, scRNAseq, SpectraStash

Suggests Me (3): augere.core, MsStash, savingBiocObjects